J3_1J5A_002

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCAG*CGAAC*GAUGAG

Length

15 nucleotides

Bulged bases

1J5A|1|A|A|777

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1J5A_002 not in the Motif Atlas

Geometric match to J3_5TBW_005

Geometric discrepancy: 0.2816

The information below is about J3_5TBW_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_33851.1

Basepair signature

cWW-tSH-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

1J5A|1|A|C|710
1J5A|1|A|C|711
1J5A|1|A|A|712
1J5A|1|A|G|713
*
1J5A|1|A|C|745
1J5A|1|A|G|746
1J5A|1|A|A|747
1J5A|1|A|A|748
1J5A|1|A|C|749
*
1J5A|1|A|G|773
1J5A|1|A|A|774
1J5A|1|A|U|775
1J5A|1|A|G|776
1J5A|1|A|A|777
1J5A|1|A|G|778

Current chains

Chain A

23S RRNA

Nearby chains