J3_1J5A_004

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGUAAG*CGA*UAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1J5A_004 not in the Motif Atlas

Homologous match to J3_7A0S_006

Geometric discrepancy: 0.1691

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

1J5A|1|A|C|1311
1J5A|1|A|G|1312
1J5A|1|A|U|1313
1J5A|1|A|A|1314
1J5A|1|A|A|1315
1J5A|1|A|G|1316
*
1J5A|1|A|C|1641
1J5A|1|A|G|1642
1J5A|1|A|A|1643
*
1J5A|1|A|U|1656
1J5A|1|A|A|1657
1J5A|1|A|A|1658
1J5A|1|A|G|1659

Current chains

Chain A

23S RRNA

Nearby chains