J3_1J5A_009

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1J5A_009 not in the Motif Atlas

Geometric match to J3_7A0S_001

Geometric discrepancy: 0.1483

The information below is about J3_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

10

Unit IDs

1J5A|1|A|G|30
1J5A|1|A|C|31
*
1J5A|1|A|G|485
1J5A|1|A|U|486
1J5A|1|A|G|487
1J5A|1|A|A|488
1J5A|1|A|A|489
1J5A|1|A|A|490
1J5A|1|A|A|491
1J5A|1|A|G|492
*
1J5A|1|A|C|519
1J5A|1|A|C|520

Current chains

Chain A

23S RRNA

Nearby chains