J3_1J5A_013
3D structure
- PDB id
- 1J5A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- CCUG*CGAUAGCGCAUAGUAC*GGAAAG
- Length
- 26 nucleotides
- Bulged bases
- 1J5A|1|A|U|460, 1J5A|1|A|U|467
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1J5A_013 not in the Motif Atlas
- Homologous match to J3_7A0S_016
- Geometric discrepancy: 0.1491
- The information below is about J3_7A0S_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
1J5A|1|A|C|32
1J5A|1|A|C|33
1J5A|1|A|U|34
1J5A|1|A|G|35
*
1J5A|1|A|C|457
1J5A|1|A|G|458
1J5A|1|A|A|459
1J5A|1|A|U|460
1J5A|1|A|A|461
1J5A|1|A|G|462
1J5A|1|A|C|463
1J5A|1|A|G|464
1J5A|1|A|C|465
1J5A|1|A|A|466
1J5A|1|A|U|467
1J5A|1|A|A|468
1J5A|1|A|G|469
1J5A|1|A|U|470
1J5A|1|A|A|471
1J5A|1|A|C|472
*
1J5A|1|A|G|479
1J5A|1|A|G|480
1J5A|1|A|A|481
1J5A|1|A|A|482
1J5A|1|A|A|483
1J5A|1|A|G|484
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain K
- RIBOSOMAL PROTEIN L4
Coloring options: