J3_1J5A_023

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UCGGGAC*GACAG*CA

Length

14 nucleotides

Bulged bases

1J5A|1|A|A|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1J5A_023 not in the Motif Atlas

Homologous match to J3_7A0S_018

Geometric discrepancy: 0.1366

The information below is about J3_7A0S_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

9

Unit IDs

1J5A|1|A|U|1357
1J5A|1|A|C|1358
1J5A|1|A|G|1359
1J5A|1|A|G|1360
1J5A|1|A|G|1361
1J5A|1|A|A|1362
1J5A|1|A|C|1363
*
1J5A|1|A|G|1394
1J5A|1|A|A|1395
1J5A|1|A|C|1396
1J5A|1|A|A|1397
1J5A|1|A|G|1398
*
1J5A|1|A|C|1415
1J5A|1|A|A|1416

Current chains

Chain A

23S RRNA

Nearby chains