J3_1JJ2_016
3D structure
- PDB id
- 1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- CCGGUC*GGAAA*UG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1JJ2_016 not in the Motif Atlas
- Homologous match to J3_4V9F_016
- Geometric discrepancy: 0.0397
- The information below is about J3_4V9F_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_94309.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
1JJ2|1|0|C|1450
1JJ2|1|0|C|1451
1JJ2|1|0|G|1452
1JJ2|1|0|G|1453
1JJ2|1|0|U|1454
1JJ2|1|0|C|1455
*
1JJ2|1|0|G|1490
1JJ2|1|0|G|1491
1JJ2|1|0|A|1492
1JJ2|1|0|A|1493
1JJ2|1|0|A|1494
*
1JJ2|1|0|U|1511
1JJ2|1|0|G|1512
Current chains
- Chain 0
- 23S RRNA
Nearby chains
- Chain 1
- RIBOSOMAL PROTEIN L39E
- Chain R
- RIBOSOMAL PROTEIN L23
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