J3_1JZX_005

3D structure

PDB id

1JZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

1JZX|1|A|A|1625

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1JZX_005 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.2163

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

1JZX|1|A|C|1319
1JZX|1|A|A|1320
1JZX|1|A|A|1321
1JZX|1|A|G|1322
*
1JZX|1|A|C|1621
1JZX|1|A|G|1622
1JZX|1|A|C|1623
1JZX|1|A|A|1624
1JZX|1|A|A|1625
1JZX|1|A|A|1626
1JZX|1|A|C|1627
*
1JZX|1|A|G|1636
1JZX|1|A|U|1637
1JZX|1|A|G|1638

Current chains

Chain A

23S rRNA

Nearby chains