J3_1JZX_008

3D structure

PDB id

1JZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAUC*GUUG*CAUUAAAG

Length

16 nucleotides

Bulged bases

1JZX|1|A|A|2497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1JZX_008 not in the Motif Atlas

Geometric match to J3_4V9F_009

Geometric discrepancy: 0.2516

The information below is about J3_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68010.1

Basepair signature

cWW-cWH-cWW-cSS-tWH-tSS-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

1JZX|1|A|C|2496
1JZX|1|A|A|2497
1JZX|1|A|U|2498
1JZX|1|A|C|2499
*
1JZX|1|A|G|2524
1JZX|1|A|U|2525
1JZX|1|A|U|2526
1JZX|1|A|G|2527
*
1JZX|1|A|C|2539
1JZX|1|A|A|2540
1JZX|1|A|U|2541
1JZX|1|A|U|2542
1JZX|1|A|A|2543
1JZX|1|A|A|2544
1JZX|1|A|A|2545
1JZX|1|A|G|2546

Current chains

Chain A

23S rRNA

Nearby chains