J3_1JZX_011

3D structure

PDB id

1JZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UC*GUUAAG*CAUCA

Length

13 nucleotides

Bulged bases

1JZX|1|A|U|2808

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1JZX_011 not in the Motif Atlas

Homologous match to J3_7A0S_013

Geometric discrepancy: 0.1757

The information below is about J3_7A0S_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76911.2

Basepair signature

cWW-tHS-F-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

1JZX|1|A|U|2789
1JZX|1|A|C|2790
*
1JZX|1|A|G|2806
1JZX|1|A|U|2807
1JZX|1|A|U|2808
1JZX|1|A|A|2809
1JZX|1|A|A|2810
1JZX|1|A|G|2811
*
1JZX|1|A|C|2857
1JZX|1|A|A|2858
1JZX|1|A|U|2859
1JZX|1|A|C|2860
1JZX|1|A|A|2861

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

Ribosomal Protein L32