J3_1JZX_023

3D structure

PDB id

1JZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UCGGGAC*GACAG*CA

Length

14 nucleotides

Bulged bases

1JZX|1|A|A|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1JZX_023 not in the Motif Atlas

Homologous match to J3_7A0S_018

Geometric discrepancy: 0.1348

The information below is about J3_7A0S_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

10

Unit IDs

1JZX|1|A|U|1357
1JZX|1|A|C|1358
1JZX|1|A|G|1359
1JZX|1|A|G|1360
1JZX|1|A|G|1361
1JZX|1|A|A|1362
1JZX|1|A|C|1363
*
1JZX|1|A|G|1394
1JZX|1|A|A|1395
1JZX|1|A|C|1396
1JZX|1|A|A|1397
1JZX|1|A|G|1398
*
1JZX|1|A|C|1415
1JZX|1|A|A|1416

Current chains

Chain A

23S rRNA

Nearby chains