J3_1JZZ_007

3D structure

PDB id

1JZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CUC*GAG*UAGAAG

Length

12 nucleotides

Bulged bases

1JZZ|1|A|G|2313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1JZZ_007 not in the Motif Atlas

Homologous match to J3_7A0S_010

Geometric discrepancy: 0.2543

The information below is about J3_7A0S_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_05327.2

Basepair signature

cWW-tWH-tWW-cWW-F-cWW

Number of instances in this motif group

11

Unit IDs

1JZZ|1|A|C|2274
1JZZ|1|A|U|2275
1JZZ|1|A|C|2276
*
1JZZ|1|A|G|2300
1JZZ|1|A|A|2301
1JZZ|1|A|G|2302
*
1JZZ|1|A|U|2311
1JZZ|1|A|A|2312
1JZZ|1|A|G|2313
1JZZ|1|A|A|2314
1JZZ|1|A|A|2315
1JZZ|1|A|G|2316

Current chains

Chain A

23S rRNA

Nearby chains