J3_1K01_005

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

1K01|1|A|A|1625

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1K01_005 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.2145

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

1K01|1|A|C|1319
1K01|1|A|A|1320
1K01|1|A|A|1321
1K01|1|A|G|1322
*
1K01|1|A|C|1621
1K01|1|A|G|1622
1K01|1|A|C|1623
1K01|1|A|A|1624
1K01|1|A|A|1625
1K01|1|A|A|1626
1K01|1|A|C|1627
*
1K01|1|A|G|1636
1K01|1|A|U|1637
1K01|1|A|G|1638

Current chains

Chain A

23S rRNA

Nearby chains