J3_1K01_008

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAUC*GUUG*CAUUAAAG

Length

16 nucleotides

Bulged bases

1K01|1|A|A|2497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1K01_008 not in the Motif Atlas

Geometric match to J3_4V9F_009

Geometric discrepancy: 0.2512

The information below is about J3_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68010.1

Basepair signature

cWW-cWH-cWW-cSS-tWH-tSS-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

1K01|1|A|C|2496
1K01|1|A|A|2497
1K01|1|A|U|2498
1K01|1|A|C|2499
*
1K01|1|A|G|2524
1K01|1|A|U|2525
1K01|1|A|U|2526
1K01|1|A|G|2527
*
1K01|1|A|C|2539
1K01|1|A|A|2540
1K01|1|A|U|2541
1K01|1|A|U|2542
1K01|1|A|A|2543
1K01|1|A|A|2544
1K01|1|A|A|2545
1K01|1|A|G|2546

Current chains

Chain A

23S rRNA

Nearby chains