J3_1K8A_009
3D structure
- PDB id
- 1K8A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal structure of Carbomycin A bound to the 50S ribosomal subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CAUC*GUGA*UAUUAAAG
- Length
- 16 nucleotides
- Bulged bases
- 1K8A|1|A|A|2553, 1K8A|1|A|U|2554
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1K8A_009 not in the Motif Atlas
- Homologous match to J3_4V9F_009
- Geometric discrepancy: 0.0307
- The information below is about J3_4V9F_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_68010.1
- Basepair signature
- cWW-cWH-cWW-cSS-tWH-tSS-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
1K8A|1|A|C|2552
1K8A|1|A|A|2553
1K8A|1|A|U|2554
1K8A|1|A|C|2555
*
1K8A|1|A|G|2580
1K8A|1|A|U|2581
1K8A|1|A|G|2582
1K8A|1|A|A|2583
*
1K8A|1|A|U|2595
1K8A|1|A|A|2596
1K8A|1|A|U|2597
1K8A|1|A|U|2598
1K8A|1|A|A|2599
1K8A|1|A|A|2600
1K8A|1|A|A|2601
1K8A|1|A|G|2602
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain D
- RIBOSOMAL PROTEIN L3
- Chain K
- RIBOSOMAL PROTEIN L13
- Chain L
- RIBOSOMAL PROTEIN L14
Coloring options: