J3_1KC8_013
3D structure
- PDB id
- 1KC8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal Structure of Blasticidin S Bound to the 50S Ribosomal Subunit
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.01 Å
Loop
- Sequence
- CUCG*CGAUAGUGAACAAGUAG*CGAACG
- Length
- 27 nucleotides
- Bulged bases
- 1KC8|1|A|C|31, 1KC8|1|A|U|454, 1KC8|1|A|A|462
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1KC8_013 not in the Motif Atlas
- Homologous match to J3_4V9F_013
- Geometric discrepancy: 0.0284
- The information below is about J3_4V9F_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
1KC8|1|A|C|29
1KC8|1|A|U|30
1KC8|1|A|C|31
1KC8|1|A|G|32
*
1KC8|1|A|C|451
1KC8|1|A|G|452
1KC8|1|A|A|453
1KC8|1|A|U|454
1KC8|1|A|A|455
1KC8|1|A|G|456
1KC8|1|A|U|457
1KC8|1|A|G|458
1KC8|1|A|A|459
1KC8|1|A|A|460
1KC8|1|A|C|461
1KC8|1|A|A|462
1KC8|1|A|A|463
1KC8|1|A|G|464
1KC8|1|A|U|465
1KC8|1|A|A|466
1KC8|1|A|G|467
*
1KC8|1|A|C|474
1KC8|1|A|G|475
1KC8|1|A|A|476
1KC8|1|A|A|477
1KC8|1|A|C|478
1KC8|1|A|G|479
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain 2
- RIBOSOMAL PROTEIN L37E
- Chain 3
- RIBOSOMAL PROTEIN L39E
- Chain E
- RIBOSOMAL PROTEIN L4
- Chain U
- RIBOSOMAL PROTEIN L24
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