J3_1KD1_001
3D structure
- PDB id
- 1KD1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal Structure of Spiramycin bound to the 50S Ribosomal Subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CAAAC*GUGUCAG*CAG
- Length
- 15 nucleotides
- Bulged bases
- 1KD1|1|A|A|272
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1KD1_001 not in the Motif Atlas
- Homologous match to J3_4V9F_001
- Geometric discrepancy: 0.0307
- The information below is about J3_4V9F_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_96248.1
- Basepair signature
- cWW-tHW-F-tHS-cSS-cWW-F-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
1KD1|1|A|C|240
1KD1|1|A|A|241
1KD1|1|A|A|242
1KD1|1|A|A|243
1KD1|1|A|C|244
*
1KD1|1|A|G|267
1KD1|1|A|U|268
1KD1|1|A|G|269
1KD1|1|A|U|270
1KD1|1|A|C|271
1KD1|1|A|A|272
1KD1|1|A|G|273
*
1KD1|1|A|C|377
1KD1|1|A|A|378
1KD1|1|A|G|379
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain H
- RIBOSOMAL PROTEIN L7AE
- Chain N
- RIBOSOMAL PROTEIN L15E
Coloring options: