J3_1KD1_013
3D structure
- PDB id
- 1KD1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal Structure of Spiramycin bound to the 50S Ribosomal Subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CUCG*CGAUAGUGAACAAGUAG*CGAACG
- Length
- 27 nucleotides
- Bulged bases
- 1KD1|1|A|C|31, 1KD1|1|A|U|454, 1KD1|1|A|A|462
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1KD1_013 not in the Motif Atlas
- Homologous match to J3_4V9F_013
- Geometric discrepancy: 0.0321
- The information below is about J3_4V9F_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
1KD1|1|A|C|29
1KD1|1|A|U|30
1KD1|1|A|C|31
1KD1|1|A|G|32
*
1KD1|1|A|C|451
1KD1|1|A|G|452
1KD1|1|A|A|453
1KD1|1|A|U|454
1KD1|1|A|A|455
1KD1|1|A|G|456
1KD1|1|A|U|457
1KD1|1|A|G|458
1KD1|1|A|A|459
1KD1|1|A|A|460
1KD1|1|A|C|461
1KD1|1|A|A|462
1KD1|1|A|A|463
1KD1|1|A|G|464
1KD1|1|A|U|465
1KD1|1|A|A|466
1KD1|1|A|G|467
*
1KD1|1|A|C|474
1KD1|1|A|G|475
1KD1|1|A|A|476
1KD1|1|A|A|477
1KD1|1|A|C|478
1KD1|1|A|G|479
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain 2
- RIBOSOMAL PROTEIN L37E
- Chain 3
- RIBOSOMAL PROTEIN L39E
- Chain E
- RIBOSOMAL PROTEIN L4
- Chain U
- RIBOSOMAL PROTEIN L24
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