J3_1KQS_009

3D structure

PDB id

1KQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAUC*GUGA*UAUUAAAG

Length

16 nucleotides

Bulged bases

1KQS|1|0|A|2553, 1KQS|1|0|U|2554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1KQS_009 not in the Motif Atlas

Homologous match to J3_4V9F_009

Geometric discrepancy: 0.0347

The information below is about J3_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69441.1

Basepair signature

cWW-cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

1

Unit IDs

1KQS|1|0|C|2552
1KQS|1|0|A|2553
1KQS|1|0|U|2554
1KQS|1|0|C|2555
*
1KQS|1|0|G|2580
1KQS|1|0|U|2581
1KQS|1|0|G|2582
1KQS|1|0|A|2583
*
1KQS|1|0|U|2595
1KQS|1|0|A|2596
1KQS|1|0|U|2597
1KQS|1|0|U|2598
1KQS|1|0|A|2599
1KQS|1|0|A|2600
1KQS|1|0|A|2601
1KQS|1|0|G|2602

Current chains

Chain 0

23S RRNA

Nearby chains

Chain B

RIBOSOMAL PROTEIN L3

Chain I

RIBOSOMAL PROTEIN L13

Chain J

RIBOSOMAL PROTEIN L14