J3_1KQS_018

3D structure

PDB id

1KQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCC*GUCUAGCGAACC*GAUGAC

Length

21 nucleotides

Bulged bases

1KQS|1|0|A|2425, 1KQS|1|0|A|2463

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1KQS_018 not in the Motif Atlas

Homologous match to J3_4V9F_018

Geometric discrepancy: 0.0886

The information below is about J3_4V9F_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44792.1

Basepair signature

cWW-F-tHH-cWW-tHW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

1KQS|1|0|G|2316
1KQS|1|0|C|2317
1KQS|1|0|C|2318
*
1KQS|1|0|G|2421
1KQS|1|0|U|2422
1KQS|1|0|C|2423
1KQS|1|0|U|2424
1KQS|1|0|A|2425
1KQS|1|0|G|2426
1KQS|1|0|C|2427
1KQS|1|0|G|2428
1KQS|1|0|A|2429
1KQS|1|0|A|2430
1KQS|1|0|C|2431
1KQS|1|0|C|2432
*
1KQS|1|0|G|2459
1KQS|1|0|A|2460
1KQS|1|0|U|2461
1KQS|1|0|G|2462
1KQS|1|0|A|2463
1KQS|1|0|C|2464

Current chains

Chain 0

23S RRNA

Nearby chains

Chain 2

RIBOSOMAL PROTEIN L44E

Chain K

RIBOSOMAL PROTEIN L15

Chain P

RIBOSOMAL PROTEIN L21E