3D structure

PDB id
1M90 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Co-crystal structure of CCA-Phe-caproic acid-biotin and sparsomycin bound to the 50S ribosomal subunit
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
GCC*GUCUAGCGAACC*GAUGAC
Length
21 nucleotides
Bulged bases
1M90|1|A|A|2425, 1M90|1|A|A|2463
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_1M90_018 not in the Motif Atlas
Homologous match to J3_4V9F_018
Geometric discrepancy: 0.0239
The information below is about J3_4V9F_018
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_44792.1
Basepair signature
cWW-F-tHH-cWW-tHW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
1

Unit IDs

1M90|1|A|G|2316
1M90|1|A|C|2317
1M90|1|A|C|2318
*
1M90|1|A|G|2421
1M90|1|A|U|2422
1M90|1|A|C|2423
1M90|1|A|U|2424
1M90|1|A|A|2425
1M90|1|A|G|2426
1M90|1|A|C|2427
1M90|1|A|G|2428
1M90|1|A|A|2429
1M90|1|A|A|2430
1M90|1|A|C|2431
1M90|1|A|C|2432
*
1M90|1|A|G|2459
1M90|1|A|A|2460
1M90|1|A|U|2461
1M90|1|A|G|2462
1M90|1|A|A|2463
1M90|1|A|C|2464

Current chains

Chain A
23S RRNA

Nearby chains

Chain 4
RIBOSOMAL PROTEIN L44E
Chain M
RIBOSOMAL PROTEIN L15
Chain R
RIBOSOMAL PROTEIN L21E

Coloring options:


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