3D structure

PDB id
1N33 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer rna anticodon stem-loop mismatched at the second codon position at the a site with paromomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.35 Å

Loop

Sequence
CUAG*CGAAG*CGUUAAG
Length
16 nucleotides
Bulged bases
1N33|1|A|U|871, 1N33|1|A|A|873
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_1N33_001 not in the Motif Atlas
Homologous match to J3_4LFB_001
Geometric discrepancy: 0.0825
The information below is about J3_4LFB_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_85054.4
Basepair signature
cWW-tWW-tHS-F-cWW-tHS-cWW-F
Number of instances in this motif group
3

Unit IDs

1N33|1|A|C|826
1N33|1|A|U|827
1N33|1|A|A|828
1N33|1|A|G|829
*
1N33|1|A|C|857
1N33|1|A|G|858
1N33|1|A|A|859
1N33|1|A|A|860
1N33|1|A|G|861
*
1N33|1|A|C|868
1N33|1|A|G|869
1N33|1|A|U|870
1N33|1|A|U|871
1N33|1|A|A|872
1N33|1|A|A|873
1N33|1|A|G|874

Current chains

Chain A
16S RIBOSOMAL RNA

Nearby chains

Chain B
30S RIBOSOMAL PROTEIN S2
Chain H
30S RIBOSOMAL PROTEIN S8

Coloring options:


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