J3_1N33_005

3D structure

PDB id

1N33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer rna anticodon stem-loop mismatched at the second codon position at the a site with paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1N33_005 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1741

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

1N33|1|A|C|990
1N33|1|A|U|991
1N33|1|A|U|992
1N33|1|A|G|993
1N33|1|A|A|994
1N33|1|A|C|995
1N33|1|A|A|996
1N33|1|A|U|997
*
1N33|1|A|A|1044
1N33|1|A|C|1045
1N33|1|A|A|1046
1N33|1|A|G|1047
*
1N33|1|A|C|1210
1N33|1|A|U|1211
1N33|1|A|U|1212
1N33|1|A|A|1213
1N33|1|A|C|1214
1N33|1|A|G|1215

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain N

30S RIBOSOMAL PROTEIN S14