3D structure

PDB id
1N36 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of crystallographically disordered codon and near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position
Experimental method
X-RAY DIFFRACTION
Resolution
3.65 Å

Loop

Sequence
UGGA*UAC*GGAA
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_1N36_002 not in the Motif Atlas
Homologous match to J3_4LFB_003
Geometric discrepancy: 0.1253
The information below is about J3_4LFB_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_52655.4
Basepair signature
cWW-tSH-cWW-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

1N36|1|A|U|943
1N36|1|A|G|944
1N36|1|A|G|945
1N36|1|A|A|946
*
1N36|1|A|U|1235
1N36|1|A|A|1236
1N36|1|A|C|1237
*
1N36|1|A|G|1337
1N36|1|A|G|1338
1N36|1|A|A|1339
1N36|1|A|A|1340

Current chains

Chain A
16S RIBOSOMAL RNA

Nearby chains

Chain I
30S RIBOSOMAL PROTEIN S9
Chain M
30S RIBOSOMAL PROTEIN S13
Chain V
30S RIBOSOMAL PROTEIN THX

Coloring options:


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