3D structure

PDB id
1N36 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of crystallographically disordered codon and near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position
Experimental method
X-RAY DIFFRACTION
Resolution
3.65 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUACC*GGGCGA
Length
27 nucleotides
Bulged bases
1N36|1|A|A|975, 1N36|1|A|G|976, 1N36|1|A|A|978
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_1N36_003 not in the Motif Atlas
Homologous match to J3_6CZR_062
Geometric discrepancy: 0.1469
The information below is about J3_6CZR_062
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_59791.1
Basepair signature
cWW-F-F-F-F-F-tSS-F-F-F-F-F-F-F-F-F-F-cWW-F-F-F
Number of instances in this motif group
1

Unit IDs

1N36|1|A|U|955
1N36|1|A|U|956
1N36|1|A|U|957
1N36|1|A|A|958
1N36|1|A|A|959
1N36|1|A|U|960
1N36|1|A|U|961
1N36|1|A|C|962
*
1N36|1|A|G|973
1N36|1|A|A|974
1N36|1|A|A|975
1N36|1|A|G|976
1N36|1|A|A|977
1N36|1|A|A|978
1N36|1|A|C|979
1N36|1|A|C|980
1N36|1|A|U|981
1N36|1|A|U|982
1N36|1|A|A|983
1N36|1|A|C|984
1N36|1|A|C|985
*
1N36|1|A|G|1220
1N36|1|A|G|1221
1N36|1|A|G|1222
1N36|1|A|C|1223
1N36|1|A|G|1224
1N36|1|A|A|1225

Current chains

Chain A
16S RIBOSOMAL RNA

Nearby chains

Chain J
30S RIBOSOMAL PROTEIN S10
Chain M
30S RIBOSOMAL PROTEIN S13
Chain N
30S RIBOSOMAL PROTEIN S14
Chain S
30S RIBOSOMAL PROTEIN S19

Coloring options:


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