J3_1NJI_001
3D structure
- PDB id
- 1NJI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of chloramphenicol bound to the 50S ribosomal subunit
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CAAAC*GUGUCAG*CAG
- Length
- 15 nucleotides
- Bulged bases
- 1NJI|1|A|A|272
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1NJI_001 not in the Motif Atlas
- Homologous match to J3_4V9F_001
- Geometric discrepancy: 0.0295
- The information below is about J3_4V9F_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_96248.1
- Basepair signature
- cWW-tHW-F-tHS-cSS-cWW-F-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
1NJI|1|A|C|240
1NJI|1|A|A|241
1NJI|1|A|A|242
1NJI|1|A|A|243
1NJI|1|A|C|244
*
1NJI|1|A|G|267
1NJI|1|A|U|268
1NJI|1|A|G|269
1NJI|1|A|U|270
1NJI|1|A|C|271
1NJI|1|A|A|272
1NJI|1|A|G|273
*
1NJI|1|A|C|377
1NJI|1|A|A|378
1NJI|1|A|G|379
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain H
- 50S ribosomal protein L7Ae
- Chain N
- 50S ribosomal protein L15E
Coloring options: