J3_1NJI_019
3D structure
- PDB id
- 1NJI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of chloramphenicol bound to the 50S ribosomal subunit
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GCC*GUCUAGCGAACC*GAUGAC
- Length
- 21 nucleotides
- Bulged bases
- 1NJI|1|A|A|2425, 1NJI|1|A|C|2427, 1NJI|1|A|A|2463
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1NJI_019 not in the Motif Atlas
- Homologous match to J3_4V9F_018
- Geometric discrepancy: 0.0238
- The information below is about J3_4V9F_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44792.1
- Basepair signature
- cWW-F-tHH-cWW-tHW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
1NJI|1|A|G|2316
1NJI|1|A|C|2317
1NJI|1|A|C|2318
*
1NJI|1|A|G|2421
1NJI|1|A|U|2422
1NJI|1|A|C|2423
1NJI|1|A|U|2424
1NJI|1|A|A|2425
1NJI|1|A|G|2426
1NJI|1|A|C|2427
1NJI|1|A|G|2428
1NJI|1|A|A|2429
1NJI|1|A|A|2430
1NJI|1|A|C|2431
1NJI|1|A|C|2432
*
1NJI|1|A|G|2459
1NJI|1|A|A|2460
1NJI|1|A|U|2461
1NJI|1|A|G|2462
1NJI|1|A|A|2463
1NJI|1|A|C|2464
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L44E
- Chain M
- 50S ribosomal protein L15P
- Chain R
- 50S ribosomal protein L21e
Coloring options: