J3_1NJM_005

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

1NJM|1|0|A|1625

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1NJM_005 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.3981

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

1NJM|1|0|C|1319
1NJM|1|0|A|1320
1NJM|1|0|A|1321
1NJM|1|0|G|1322
*
1NJM|1|0|C|1621
1NJM|1|0|G|1622
1NJM|1|0|C|1623
1NJM|1|0|A|1624
1NJM|1|0|A|1625
1NJM|1|0|A|1626
1NJM|1|0|C|1627
*
1NJM|1|0|G|1636
1NJM|1|0|U|1637
1NJM|1|0|G|1638

Current chains

Chain 0

23S ribosomal RNA

Nearby chains