J3_1NJO_018

3D structure

PDB id

1NJO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CUC*GAG*UAGAAG

Length

12 nucleotides

Bulged bases

1NJO|1|0|U|2275, 1NJO|1|0|G|2313, 1NJO|1|0|A|2315

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1NJO_018 not in the Motif Atlas

Homologous match to J3_7A0S_010

Geometric discrepancy: 0.5496

The information below is about J3_7A0S_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_05327.2

Basepair signature

cWW-tWH-tWW-cWW-F-cWW

Number of instances in this motif group

11

Unit IDs

1NJO|1|0|C|2274
1NJO|1|0|U|2275
1NJO|1|0|C|2276
*
1NJO|1|0|G|2300
1NJO|1|0|A|2301
1NJO|1|0|G|2302
*
1NJO|1|0|U|2311
1NJO|1|0|A|2312
1NJO|1|0|G|2313
1NJO|1|0|A|2314
1NJO|1|0|A|2315
1NJO|1|0|G|2316

Current chains

Chain 0

23S ribosomal RNA

Nearby chains