J3_1NJP_002

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCAG*CGAAC*GAUGAG

Length

15 nucleotides

Bulged bases

1NJP|1|0|A|777

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1NJP_002 not in the Motif Atlas

Homologous match to J3_7A0S_005

Geometric discrepancy: 0.5707

The information below is about J3_7A0S_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.1

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

1NJP|1|0|C|710
1NJP|1|0|C|711
1NJP|1|0|A|712
1NJP|1|0|G|713
*
1NJP|1|0|C|745
1NJP|1|0|G|746
1NJP|1|0|A|747
1NJP|1|0|A|748
1NJP|1|0|C|749
*
1NJP|1|0|G|773
1NJP|1|0|A|774
1NJP|1|0|U|775
1NJP|1|0|G|776
1NJP|1|0|A|777
1NJP|1|0|G|778

Current chains

Chain 0

23S ribosomal RNA

Nearby chains