J3_1NJP_011

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UC*GUUAAG*CAUCA

Length

13 nucleotides

Bulged bases

1NJP|1|0|U|2808, 1NJP|1|0|A|2810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1NJP_011 not in the Motif Atlas

Homologous match to J3_7A0S_013

Geometric discrepancy: 0.2998

The information below is about J3_7A0S_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76911.2

Basepair signature

cWW-tHS-F-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

1NJP|1|0|U|2789
1NJP|1|0|C|2790
*
1NJP|1|0|G|2806
1NJP|1|0|U|2807
1NJP|1|0|U|2808
1NJP|1|0|A|2809
1NJP|1|0|A|2810
1NJP|1|0|G|2811
*
1NJP|1|0|C|2857
1NJP|1|0|A|2858
1NJP|1|0|U|2859
1NJP|1|0|C|2860
1NJP|1|0|A|2861

Current chains

Chain 0

23S ribosomal RNA

Nearby chains