J3_1NKW_002

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCAG*CGAAC*GAUGAG

Length

15 nucleotides

Bulged bases

1NKW|1|0|U|775, 1NKW|1|0|A|777

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1NKW_002 not in the Motif Atlas

Geometric match to J3_5TBW_005

Geometric discrepancy: 0.2927

The information below is about J3_5TBW_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_33851.1

Basepair signature

cWW-tSH-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

1NKW|1|0|C|710
1NKW|1|0|C|711
1NKW|1|0|A|712
1NKW|1|0|G|713
*
1NKW|1|0|C|745
1NKW|1|0|G|746
1NKW|1|0|A|747
1NKW|1|0|A|748
1NKW|1|0|C|749
*
1NKW|1|0|G|773
1NKW|1|0|A|774
1NKW|1|0|U|775
1NKW|1|0|G|776
1NKW|1|0|A|777
1NKW|1|0|G|778

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2