J3_1NKW_004

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGUAAG*CGA*UAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1NKW_004 not in the Motif Atlas

Homologous match to J3_7A0S_006

Geometric discrepancy: 0.2147

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

1NKW|1|0|C|1311
1NKW|1|0|G|1312
1NKW|1|0|U|1313
1NKW|1|0|A|1314
1NKW|1|0|A|1315
1NKW|1|0|G|1316
*
1NKW|1|0|C|1641
1NKW|1|0|G|1642
1NKW|1|0|A|1643
*
1NKW|1|0|U|1656
1NKW|1|0|A|1657
1NKW|1|0|A|1658
1NKW|1|0|G|1659

Current chains

Chain 0

23S ribosomal RNA

Nearby chains