J3_1NKW_008

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

1NKW|1|0|A|2497, 1NKW|1|0|U|2498

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1NKW_008 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.1982

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

1NKW|1|0|C|2496
1NKW|1|0|A|2497
1NKW|1|0|U|2498
1NKW|1|0|C|2499
*
1NKW|1|0|G|2524
1NKW|1|0|U|2525
1NKW|1|0|U|2526
*
1NKW|1|0|A|2540
1NKW|1|0|U|2541
1NKW|1|0|U|2542
1NKW|1|0|A|2543
1NKW|1|0|A|2544
1NKW|1|0|A|2545
1NKW|1|0|G|2546

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain I

50S ribosomal protein L14