J3_1NKW_011

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UCGGGAC*GACAG*CA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1NKW_011 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.3203

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

1NKW|1|0|U|1357
1NKW|1|0|C|1358
1NKW|1|0|G|1359
1NKW|1|0|G|1360
1NKW|1|0|G|1361
1NKW|1|0|A|1362
1NKW|1|0|C|1363
*
1NKW|1|0|G|1394
1NKW|1|0|A|1395
1NKW|1|0|C|1396
1NKW|1|0|A|1397
1NKW|1|0|G|1398
*
1NKW|1|0|C|1415
1NKW|1|0|A|1416

Current chains

Chain 0

23S ribosomal RNA

Nearby chains