3D structure

PDB id
1NKW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CCUG*CGAUAGCGCAUAGUAC*GGAAAG
Length
26 nucleotides
Bulged bases
1NKW|1|0|U|34, 1NKW|1|0|U|460, 1NKW|1|0|U|467
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_1NKW_014 not in the Motif Atlas
Homologous match to J3_7A0S_016
Geometric discrepancy: 0.2362
The information below is about J3_7A0S_016
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

1NKW|1|0|C|32
1NKW|1|0|C|33
1NKW|1|0|U|34
1NKW|1|0|G|35
*
1NKW|1|0|C|457
1NKW|1|0|G|458
1NKW|1|0|A|459
1NKW|1|0|U|460
1NKW|1|0|A|461
1NKW|1|0|G|462
1NKW|1|0|C|463
1NKW|1|0|G|464
1NKW|1|0|C|465
1NKW|1|0|A|466
1NKW|1|0|U|467
1NKW|1|0|A|468
1NKW|1|0|G|469
1NKW|1|0|U|470
1NKW|1|0|A|471
1NKW|1|0|C|472
*
1NKW|1|0|G|479
1NKW|1|0|G|480
1NKW|1|0|A|481
1NKW|1|0|A|482
1NKW|1|0|A|483
1NKW|1|0|G|484

Current chains

Chain 0
23S ribosomal RNA

Nearby chains

Chain 2
50S ribosomal protein L34
Chain C
50S ribosomal protein L4
Chain O
50S ribosomal protein L20
Chain R
50S ribosomal protein L23
Chain S
50S ribosomal protein L24

Coloring options:


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