J3_1NKW_020

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUG*CUAAC*GGACCG

Length

14 nucleotides

Bulged bases

1NKW|1|0|U|2075, 1NKW|1|0|A|2181

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1NKW_020 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.3863

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn in J3

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

1NKW|1|0|U|2074
1NKW|1|0|U|2075
1NKW|1|0|G|2076
*
1NKW|1|0|C|2179
1NKW|1|0|U|2180
1NKW|1|0|A|2181
1NKW|1|0|A|2182
1NKW|1|0|C|2183
*
1NKW|1|0|G|2202
1NKW|1|0|G|2203
1NKW|1|0|A|2204
1NKW|1|0|C|2205
1NKW|1|0|C|2206
1NKW|1|0|G|2207

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2

Chain F

50S ribosomal protein L9

Chain Y

50S ribosomal protein L31