J3_1NWY_002

3D structure

PDB id

1NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCAG*CGAAC*GAUGAG

Length

15 nucleotides

Bulged bases

1NWY|1|0|U|775, 1NWY|1|0|A|777

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1NWY_002 not in the Motif Atlas

Geometric match to J3_5TBW_005

Geometric discrepancy: 0.2932

The information below is about J3_5TBW_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_33851.1

Basepair signature

cWW-tSH-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

1NWY|1|0|C|710
1NWY|1|0|C|711
1NWY|1|0|A|712
1NWY|1|0|G|713
*
1NWY|1|0|C|745
1NWY|1|0|G|746
1NWY|1|0|A|747
1NWY|1|0|A|748
1NWY|1|0|C|749
*
1NWY|1|0|G|773
1NWY|1|0|A|774
1NWY|1|0|U|775
1NWY|1|0|G|776
1NWY|1|0|A|777
1NWY|1|0|G|778

Current chains

Chain 0

23S RIBOSOMAL RRNA

Nearby chains

Chain A

ribosomal protein L2