J3_1NWY_013
3D structure
- PDB id
- 1NWY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GC*GUGAAAAGAAC*GAGUGAAAGAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 1NWY|1|0|G|514, 1NWY|1|0|A|518
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1NWY_013 not in the Motif Atlas
- Homologous match to J3_4WF9_011
- Geometric discrepancy: 0.3327
- The information below is about J3_4WF9_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.2
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 10
Unit IDs
1NWY|1|0|G|30
1NWY|1|0|C|31
*
1NWY|1|0|G|485
1NWY|1|0|U|486
1NWY|1|0|G|487
1NWY|1|0|A|488
1NWY|1|0|A|489
1NWY|1|0|A|490
1NWY|1|0|A|491
1NWY|1|0|G|492
1NWY|1|0|A|493
1NWY|1|0|A|494
1NWY|1|0|C|495
*
1NWY|1|0|G|506
1NWY|1|0|A|507
1NWY|1|0|G|508
1NWY|1|0|U|509
1NWY|1|0|G|510
1NWY|1|0|A|511
1NWY|1|0|A|512
1NWY|1|0|A|513
1NWY|1|0|G|514
1NWY|1|0|A|515
1NWY|1|0|G|516
1NWY|1|0|A|517
1NWY|1|0|A|518
1NWY|1|0|C|519
1NWY|1|0|C|520
Current chains
- Chain 0
- 23S RIBOSOMAL RRNA
Nearby chains
- Chain O
- ribosomal protein L20
- Chain Q
- ribosomal protein L22
- Chain S
- ribosomal protein L24
Coloring options: