J3_1NWY_017

3D structure

PDB id

1NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUG*CUAAC*GGACCG

Length

14 nucleotides

Bulged bases

1NWY|1|0|U|2075, 1NWY|1|0|A|2181

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1NWY_017 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.3833

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

1NWY|1|0|U|2074
1NWY|1|0|U|2075
1NWY|1|0|G|2076
*
1NWY|1|0|C|2179
1NWY|1|0|U|2180
1NWY|1|0|A|2181
1NWY|1|0|A|2182
1NWY|1|0|C|2183
*
1NWY|1|0|G|2202
1NWY|1|0|G|2203
1NWY|1|0|A|2204
1NWY|1|0|C|2205
1NWY|1|0|C|2206
1NWY|1|0|G|2207

Current chains

Chain 0

23S RIBOSOMAL RRNA

Nearby chains

Chain A

ribosomal protein L2

Chain F

ribosomal protein L9

Chain Y

ribosomal protein L31