J3_1OLN_001

3D structure

PDB id

1OLN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model for thiostrepton antibiotic binding to L11 substrate from 50S ribosomal RNA

Experimental method

SOLUTION NMR, THEORETICAL MODEL

Resolution

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1OLN_001 not in the Motif Atlas

Homologous match to J3_6PRV_001

Geometric discrepancy: 0.1019

The information below is about J3_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37832.1

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

5

Unit IDs

1OLN|1|C|G|1055
1OLN|1|C|G|1056
1OLN|1|C|A|1057
*
1OLN|1|C|U|1081
1OLN|1|C|U|1082
1OLN|1|C|U|1083
1OLN|1|C|A|1084
1OLN|1|C|A|1085
1OLN|1|C|A|1086
1OLN|1|C|G|1087
*
1OLN|1|C|C|1102
1OLN|1|C|A|1103
1OLN|1|C|C|1104

Current chains

Chain C

RNA

Nearby chains

Chain A

50S RIBOSOMAL PROTEIN L11