J3_1OND_008

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

1OND|1|0|A|2497, 1OND|1|0|U|2498

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1OND_008 not in the Motif Atlas

Homologous match to J3_7A0S_011

Geometric discrepancy: 0.1961

The information below is about J3_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

1OND|1|0|C|2496
1OND|1|0|A|2497
1OND|1|0|U|2498
1OND|1|0|C|2499
*
1OND|1|0|G|2524
1OND|1|0|U|2525
1OND|1|0|U|2526
*
1OND|1|0|A|2540
1OND|1|0|U|2541
1OND|1|0|U|2542
1OND|1|0|A|2543
1OND|1|0|A|2544
1OND|1|0|A|2545
1OND|1|0|G|2546

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains