J3_1Q7Y_009
3D structure
- PDB id
- 1Q7Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of CCdAP-Puromycin bound at the Peptidyl transferase center of the 50S ribosomal subunit
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CAUC*GUGA*UAUUAAAG
- Length
- 16 nucleotides
- Bulged bases
- 1Q7Y|1|A|A|2553, 1Q7Y|1|A|U|2554
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1Q7Y_009 not in the Motif Atlas
- Homologous match to J3_4V9F_009
- Geometric discrepancy: 0.0437
- The information below is about J3_4V9F_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_68010.1
- Basepair signature
- cWW-cWH-cWW-cSS-tWH-tSS-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
1Q7Y|1|A|C|2552
1Q7Y|1|A|A|2553
1Q7Y|1|A|U|2554
1Q7Y|1|A|C|2555
*
1Q7Y|1|A|G|2580
1Q7Y|1|A|U|2581
1Q7Y|1|A|G|2582
1Q7Y|1|A|A|2583
*
1Q7Y|1|A|U|2595
1Q7Y|1|A|A|2596
1Q7Y|1|A|U|2597
1Q7Y|1|A|U|2598
1Q7Y|1|A|A|2599
1Q7Y|1|A|A|2600
1Q7Y|1|A|A|2601
1Q7Y|1|A|G|2602
Current chains
- Chain A
- 23S ribosomal rna
Nearby chains
- Chain D
- 50S ribosomal protein L3P
- Chain K
- 50S ribosomal protein L13P
- Chain L
- 50S ribosomal protein L14P
Coloring options: