3D structure

PDB id
1Q81 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of minihelix with 3' puromycin bound to A-site of the 50S ribosomal subunit.
Experimental method
X-RAY DIFFRACTION
Resolution
2.95 Å

Loop

Sequence
UAAG*CGAGAAC*GUG
Length
14 nucleotides
Bulged bases
1Q81|1|A|G|1683, 1Q81|1|A|A|1684
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_1Q81_006 not in the Motif Atlas
Homologous match to J3_4V9F_006
Geometric discrepancy: 0.0374
The information below is about J3_4V9F_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_19545.2
Basepair signature
cWW-F-F-tHS-cWW-cWW-F-F
Number of instances in this motif group
6

Unit IDs

1Q81|1|A|U|1412
1Q81|1|A|A|1413
1Q81|1|A|A|1414
1Q81|1|A|G|1415
*
1Q81|1|A|C|1680
1Q81|1|A|G|1681
1Q81|1|A|A|1682
1Q81|1|A|G|1683
1Q81|1|A|A|1684
1Q81|1|A|A|1685
1Q81|1|A|C|1686
*
1Q81|1|A|G|1695
1Q81|1|A|U|1696
1Q81|1|A|G|1697

Current chains

Chain A
23S ribosomal rna

Nearby chains

Chain 2
50S ribosomal protein L37e
Chain 3
50S ribosomal protein L39e
Chain Q
50S ribosomal protein L19E

Coloring options:


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