J3_1Q86_001
3D structure
- PDB id
- 1Q86 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of CCA-Phe-cap-biotin bound simultaneously at half occupancy to both the A-site and P-site of the the 50S ribosomal Subunit.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CAAAC*GUGUCAG*CAG
- Length
- 15 nucleotides
- Bulged bases
- 1Q86|1|A|A|272
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1Q86_001 not in the Motif Atlas
- Homologous match to J3_4V9F_001
- Geometric discrepancy: 0.0386
- The information below is about J3_4V9F_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_06335.1
- Basepair signature
- cWW-F-F-tSH-cSS-tWH-F-cWW-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
1Q86|1|A|C|240
1Q86|1|A|A|241
1Q86|1|A|A|242
1Q86|1|A|A|243
1Q86|1|A|C|244
*
1Q86|1|A|G|267
1Q86|1|A|U|268
1Q86|1|A|G|269
1Q86|1|A|U|270
1Q86|1|A|C|271
1Q86|1|A|A|272
1Q86|1|A|G|273
*
1Q86|1|A|C|377
1Q86|1|A|A|378
1Q86|1|A|G|379
Current chains
- Chain A
- 23S ribosomal rna
Nearby chains
- Chain H
- 50S ribosomal protein L7Ae
- Chain N
- L15 Ribosomal Protein
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