J3_1Q86_017

3D structure

PDB id

1Q86 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of CCA-Phe-cap-biotin bound simultaneously at half occupancy to both the A-site and P-site of the the 50S ribosomal Subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUCG*CGAUAGUGAACAAGUAG*CGAACG

Length

27 nucleotides

Bulged bases

1Q86|1|A|C|31, 1Q86|1|A|U|454, 1Q86|1|A|A|462

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1Q86_017 not in the Motif Atlas

Homologous match to J3_4V9F_013

Geometric discrepancy: 0.034

The information below is about J3_4V9F_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

1Q86|1|A|C|29
1Q86|1|A|U|30
1Q86|1|A|C|31
1Q86|1|A|G|32
*
1Q86|1|A|C|451
1Q86|1|A|G|452
1Q86|1|A|A|453
1Q86|1|A|U|454
1Q86|1|A|A|455
1Q86|1|A|G|456
1Q86|1|A|U|457
1Q86|1|A|G|458
1Q86|1|A|A|459
1Q86|1|A|A|460
1Q86|1|A|C|461
1Q86|1|A|A|462
1Q86|1|A|A|463
1Q86|1|A|G|464
1Q86|1|A|U|465
1Q86|1|A|A|466
1Q86|1|A|G|467
*
1Q86|1|A|C|474
1Q86|1|A|G|475
1Q86|1|A|A|476
1Q86|1|A|A|477
1Q86|1|A|C|478
1Q86|1|A|G|479

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain 2

50S ribosomal protein L37e

Chain 3

50S ribosomal protein L39e

Chain E

50S ribosomal protein L4E

Chain U

50S ribosomal protein L24P