J3_1QVF_009

3D structure

PDB id

1QVF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a deacylated tRNA minihelix bound to the E site of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAUC*GUGA*UAUUAAAG

Length

16 nucleotides

Bulged bases

1QVF|1|0|A|2553, 1QVF|1|0|U|2554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1QVF_009 not in the Motif Atlas

Homologous match to J3_4V9F_009

Geometric discrepancy: 0.0226

The information below is about J3_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69441.1

Basepair signature

cWW-cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

1

Unit IDs

1QVF|1|0|C|2552
1QVF|1|0|A|2553
1QVF|1|0|U|2554
1QVF|1|0|C|2555
*
1QVF|1|0|G|2580
1QVF|1|0|U|2581
1QVF|1|0|G|2582
1QVF|1|0|A|2583
*
1QVF|1|0|U|2595
1QVF|1|0|A|2596
1QVF|1|0|U|2597
1QVF|1|0|U|2598
1QVF|1|0|A|2599
1QVF|1|0|A|2600
1QVF|1|0|A|2601
1QVF|1|0|G|2602

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain B

50S ribosomal protein L3P

Chain I

50S ribosomal protein L13P

Chain J

50S ribosomal protein L14P