J3_1QVG_009
3D structure
- PDB id
- 1QVG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CAUC*GUGA*UAUUAAAG
- Length
- 16 nucleotides
- Bulged bases
- 1QVG|1|0|A|2553, 1QVG|1|0|U|2554
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1QVG_009 not in the Motif Atlas
- Homologous match to J3_4V9F_009
- Geometric discrepancy: 0.0357
- The information below is about J3_4V9F_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69441.1
- Basepair signature
- cWW-cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 1
Unit IDs
1QVG|1|0|C|2552
1QVG|1|0|A|2553
1QVG|1|0|U|2554
1QVG|1|0|C|2555
*
1QVG|1|0|G|2580
1QVG|1|0|U|2581
1QVG|1|0|G|2582
1QVG|1|0|A|2583
*
1QVG|1|0|U|2595
1QVG|1|0|A|2596
1QVG|1|0|U|2597
1QVG|1|0|U|2598
1QVG|1|0|A|2599
1QVG|1|0|A|2600
1QVG|1|0|A|2601
1QVG|1|0|G|2602
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain B
- 50S ribosomal protein L3P
- Chain I
- 50S ribosomal protein L13P
- Chain J
- 50S ribosomal protein L14P
Coloring options: