J3_1RY1_003

3D structure

PDB id

1RY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the signal recognition particle interacting with the elongation-arrested ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

12 Å

Loop

Sequence

UC*GCCUAAGG*CG

Length

12 nucleotides

Bulged bases

1RY1|1|A|C|169

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1RY1_003 not in the Motif Atlas

Homologous match to J3_1MFQ_002

Geometric discrepancy: 0.0002

The information below is about J3_1MFQ_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_36023.1

Basepair signature

cWW-cWW-cWW-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

1RY1|1|A|U|128
1RY1|1|A|C|129
*
1RY1|1|A|G|168
1RY1|1|A|C|169
1RY1|1|A|C|170
1RY1|1|A|U|171
1RY1|1|A|A|172
1RY1|1|A|A|173
1RY1|1|A|G|174
1RY1|1|A|G|175
*
1RY1|1|A|C|221
1RY1|1|A|G|222

Current chains

Chain A

SRP S domain

Nearby chains