J3_1S72_018

3D structure

PDB id

1S72 (explore in PDB, NAKB, or RNA 3D Hub)

Description

REFINED CRYSTAL STRUCTURE OF THE HALOARCULA MARISMORTUI LARGE RIBOSOMAL SUBUNIT AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GCC*GUCUAGCGAACC*GAUGAC

Length

21 nucleotides

Bulged bases

1S72|1|0|A|2425, 1S72|1|0|A|2463

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1S72_018 not in the Motif Atlas

Homologous match to J3_4V9F_018

Geometric discrepancy: 0.0152

The information below is about J3_4V9F_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44792.1

Basepair signature

cWW-F-tHH-cWW-tHW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

1S72|1|0|G|2316
1S72|1|0|C|2317
1S72|1|0|C|2318
*
1S72|1|0|G|2421
1S72|1|0|U|2422
1S72|1|0|C|2423
1S72|1|0|U|2424
1S72|1|0|A|2425
1S72|1|0|G|2426
1S72|1|0|C|2427
1S72|1|0|G|2428
1S72|1|0|A|2429
1S72|1|0|A|2430
1S72|1|0|C|2431
1S72|1|0|C|2432
*
1S72|1|0|G|2459
1S72|1|0|A|2460
1S72|1|0|U|2461
1S72|1|0|G|2462
1S72|1|0|A|2463
1S72|1|0|C|2464

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L44E

Chain L

50S ribosomal protein L15P

Chain Q

50S ribosomal protein L21e