J3_1SM1_012

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

UC*GUUAAG*CAUCA

Length

13 nucleotides

Bulged bases

1SM1|1|0|U|2807, 1SM1|1|0|U|2808, 1SM1|1|0|A|2810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1SM1_012 not in the Motif Atlas

Homologous match to J3_7A0S_013

Geometric discrepancy: 0.3315

The information below is about J3_7A0S_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76911.2

Basepair signature

cWW-tHS-F-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

1SM1|1|0|U|2789
1SM1|1|0|C|2790
*
1SM1|1|0|G|2806
1SM1|1|0|U|2807
1SM1|1|0|U|2808
1SM1|1|0|A|2809
1SM1|1|0|A|2810
1SM1|1|0|G|2811
*
1SM1|1|0|C|2857
1SM1|1|0|A|2858
1SM1|1|0|U|2859
1SM1|1|0|C|2860
1SM1|1|0|A|2861

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

50S RIBOSOMAL PROTEIN L3

Chain L

50S RIBOSOMAL PROTEIN L17

Chain N

50S RIBOSOMAL PROTEIN L19

Chain Z

50S RIBOSOMAL PROTEIN L32